Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs4930698 chr11:64085063 G/C 8.55E-9 494 31.77 28.68 33.97 KM Plot
THCA rs4940044 chr18:48676244 C/T 0 503 31.47 32.27 5.8 KM Plot
THCA rs4941653 chr13:50200008 C/T 1.45E-5 483 33.28 30.5 31.7 KM Plot
THCA rs4973452 chr2:232473045 G/A 3.05E-6 493 22.75 30.07 31.75 KM Plot
THCA rs55641400 chr3:139264103 T/C 4.35E-10 502 31.47 33.97 19.32 KM Plot
THCA rs55642746 chr3:139269414 A/G 4.83E-5 500 31.53 33.97 19.32 KM Plot
THCA rs55648229 chr11:123526472 T/C 2.84E-5 498 31.87 28.33 26.73 KM Plot
THCA rs55664016 chr19:9826780 T/C 4.26E-6 503 31.42 33.53 32.9 KM Plot
THCA rs55690691 chr10:81658942 G/T 2.7E-9 494 31.62 31.45 14.52 KM Plot
THCA rs55724241 chr3:139262770 T/C 4.69E-5 502 31.5 33.8 19.32 KM Plot
THCA rs55739745 chr11:123534946 G/A 3.81E-7 497 31.73 29.95 24.67 KM Plot
THCA rs55745107 chr6:100033744 C/T 8.85E-5 494 31.67 32.9 24.55 KM Plot
THCA rs55748129 chr2:29038309 C/T 0.000138 502 31.68 30.97 38.87 KM Plot
THCA rs55755329 chr7:32802915 A/T 0.000102 500 31.45 31.47 32.1 KM Plot
THCA rs55759315 chr7:32808626 TAGCATCCA/T 0.000102 500 31.45 31.47 32.1 KM Plot